• Pulmonary Diseases

    According to the World Health Organization (WHO) pulmonary diseases are the fourth cause of death worldwide.

    Third cause of death in the USA, Europe and Japan.

    COPD Airspace enlargement

    Chronic Obstructive Pulmonary Disease (COPD)


    COPD is characterized by remolding of the lung architecture that typically results in airspace enlargement (emphysema).


    Currently there are very limited treatment options for COPD, with the only viable option being lung transplantation.


    Thus, our lab aims to identify the mechanisms that lead to the remodeling of the lungs in COPD in order to develop new therapies to interrupt the progression of disease and reduce mortality.

    IPF Lung Fibrosis or scarring

    Idiopathic Pulmonary Fibrosis (IPF)


    IPF is a lethal lung disease of

    unknown etiology defined by chronic, progressive and irreversible interstitial fibrosis (scarring).

    This scarring process slowly obliterates the alveoli of the lung, preventing patients to obtain oxygen from the air they breathe.


    IPF has a high mortality rate of up to 80% underscoring the need to develop novel therapies to treat this fatal disease.


    Our lab focuses in understanding new molecular pathways that are important in the development of pulmonary fibrosis.

    Pulmonary Hypertension Vascular Remodeling

    Pulmonary Hypertension (PH)


    PH is a common complication of chronic lung diseases including  IPF or COPD.


    PH can also be associated with cardiovascular conditions such as left-heart disease or appear completely own its own.


    In all of these cases the diagnosis of PH is strongly associated with increased mortality and there are limited treatment options.


    The mission of our lab is to understand the mechanisms that lead to the development of PH in order to discover new treatments

  • Our Research

    What are the mechanisms that lead to chronic lung disease?

    Our research efforts focus on three main topics:

    Hyaluornan, IPF and Group III PH

    1. Understanding how changes in the lung extracellular matrix (ECM) lead to vascular remodeling in PH associated with IPF

    The presence of PH in patients with IPF is the single most significant predictor of mortality, yet there are no cures at present that effectively prevent or treat PH in patients with IPF. In this project we have identified increased levels of hyaluronan, a component of the lung ECM, in the lung of patients with a diagnosis of PH associated with IPF. We next demonstrate that the increase in hyaluronan is mediated by an elevation in hyaluronan synthase 2 (HAS2), an enzyme that makes hyaluronan. Finally we demonstrate that treatment with 4 methyl-umbelliferone (4MU), a drug that inhibits HAS2, is able to reduce levels of hyaluronan and treats PH associated with lung fibrosis. We are currently examining the mechanisms that lead to HAS2 increases in patients with IPF and examining how selective deletion of HAS2 from smooth muscle cells contributes to the development of PH.

    Alternative Polyadenylation Pulmonary Hypertension

    2. Evaluating how changes in mRNA 3’UTR length participates in the development of COPD.

    In collaboration with leaders in RNA-biology and with Dr. Leng Han, an expert in bio-informatics at UTHealth, we have identified changes in the 3’UTR length of mRNAs in patients with COPD. These mRNAs encode many proteins associated with the development of disease. In addition, we show that a protein known as cleavage factor 25 (CFIm25) regulates the length of the 3’UTRs and that depletion of this protein results in global shortening of mRNAs. This protein was also found to be depleted in patients with COPD. Our research efforts are aimed at elucidating how 3’UTR shortening contributes to the development of COPD, using tissue samples from the UTHealth Pulmonary Center of Excellence bio-bank and sophisticated experimental models of disease. In addition to this, our data also shows reduced levels of CFIm25 in remodeled vessels in PH occurring on its own (Group I) or associated with chronic lung diseases (Group III). Little is known of the role of CFIm25 in lung diseases.

    BMPR and Pulmonary Fibrosis

    3. Determining how differential loss of bone-morphogenetic-protein-receptor 2 (BMPR2) in cells of the lung lead to disease progression in IPF.


    Mutations in bone-morphogenetic-protein-receptor 2 (BMPR2) resulting in the loss of function of this receptor have been strongly linked with the development of pulmonary arterial hypertension. Yet, whether loss of function of this protein participates in the development of other lung diseases is not fully understood. Research from our lab shows that BMPR2 levels are depleted in patients with IPF and in experimental models of lung fibrosis. Our research shows that maintaining the expression of BMPR2 protects against the development of lung fibrosis. We are currently investigating how depletion and cell-specific loss-of-function of BMPR2 contributes to the pathogenesis of disease.

  • Publications

    Our most recent and selected publications are highlighted here

    Doppler echo from a PBS (panel A) or BLM (panel B) treated mouse. Panel C: VTI and Panel D: PAT from PBS or BLM treated mice obtained on days 0, 7, 14, 21, 28 and 33.

    Alterations in cardiovascular function in an experimental model of lung fibrosis and pulmonary hypertension

    Pulmonary Artery Dynamics derived from Pulsed wave Doppler echocardiography showing velocity time integral (VTI) and pulmonary acceleration time (PAT).

    Here we show that bleomycin (BLM) treatment leads to a decline in PAT as early as day 7 and 14 after BLM treatment that reduces further by day 33. VTI levels decline starting on day 21.

    HAS2 and ADORA2B positive myofibroblasts from skin samples of control and SSc patients

    The Antifibrotic Effect of A2B Adenosine Receptor Antagonism in a Mouse Model of Dermal Fibrosis.

    HAS2 and ADORA2B expression is elevated in patients with a diagnosis of systemic sclerosis (SSc)

    Here we demonstrate that the ADORA2B antagonist, GS-6201, is able to inhibit dermal fibrosis in two experimental models of skin fibrosis. These results suggest that the effect is due to downstream HAS2 synthesis by ADORA2B activation. Confirmatory studies revealed increased HAS2 and ADORA2B signals in SSc.

    Experimental design and longitudinal compliance values

    Low-dose administration of bleomycin leads to early alterations in lung mechanics.

    Experimental Design and longitudinal compliance values

    Here we demonstrate that chronic low-dose bleomycin exposure leads to changes in lung function, illustrated by compliance (C), as early as in day 7 that worsen by day 33. Lung function measurements were performed longitudinally using the flexivent to identify changes in lung mechanics.

    lung IHC for  TGM2 and SMA (panel A) and expression levels of tgm2 and Has2

    Switching-Off Adora2b in Vascular Smooth Muscle Cells Halts the Development of Pulmonary Hypertension

    Vascular ADORA2B expression modulates PH

    Using mice lacking ADORA2B in smooth muscle cells, we demonstrate that this receptor is necessary for the development of PH induced by bleomycin or by hypoxia-sugen. The novel mechanism involves Adora2b-mediated increased expression of tissue trans glutaminase (TGM2) and hyaluronan synthase 2 (HAS2).

    Hyaluronan and Group III Pulmonary Hypertension

    Inhibition of Hyaluronan Synthesis Attenuates Pulmonary Hypertension Associated with Lung Fibrosis

    Elevated vascular hyaluronan leads to pulmonary hypertension in the context of lung fibrosis

    Here we identify a unique mechanism leading to pulmonary hypertension in the context of lung fibrosis that is mediated by elevated vascular hyaluronan. Here we also show how the hyaluronan synthesis inhibitor, 4MU, prevents the development of pulmonary hypertension.

    Mechanisms of Group III PH

    Pulmonary Hypertension Associated with Idiopathic Pulmonary Fibrosis: Current and Future Perspectives

    Here we review the current understanding of the mechanisms known to lead to Group III pulmonary hypertension

    In this review we have chosen to focus on the current understating of PH in IPF, we will revisit the main mediators that have been shown to play a role in the development of the disease. We will also discuss the experimental models available to study PH associated with lung fibrosis and address the role of the right ventricle in IPF.

    BMPR2 IPF and lung Fibrosis

    Macrophage bone morphogenetic protein receptor 2 depletion in idiopathic pulmonary fibrosis and Group III pulmonary hypertension

    This is one of the first papers to identify depletion of BMPR2 in IPF

    Here we demonstrate that BMPR2 is depleted in IPF and in experimental lung fibrosis. We also demonstrate that IL-6 signalling leads to a cascade of micro-RNAs (miRs) that target the BMPR2 mRNA for degradation.

    Group III Pulmonary Hypertension (PH)

    Altered Hypoxic-Adenosine Axis and Metabolism in Group III Pulmonary Hypertension.

    Elevations in succinate activate the hypoxic-adenosine axis

    Here we show that alterations in metabolism in patients with IPF and PH lead to heightened stabilization of hypoxia-inducible factor 1 (HIF-1A). HIF-1A then drives the expression of CD73 resulting in augmented adenosine production and signaling through the adenosine A2B receptor (ADORA2B), modulating disease progression.

    reagents in the freezer

    Click on the link to access all of our published work on pubmed

    Our group has published over 40 articles in leading scientific journals.

  • Team Members

    Get to know us!

    Harry Karmouty Quintana

    Harry Karmouty-Quintana, PhD

    Harry received his undergraduate degree in Pharmacology

    from King’s College London (UK) in 2003. In 2006, he received his PhD in

    Pharmacology and Biophysics from King’s College London (UK) where he pioneered the use of Magnetic Resonance Imaging (MRI) as a tool to non-invasively image experimental lung disease. His PhD was a joint venture between King’s College London and Novartis Pharmaceuticals, located in Basel, Switzerland. From 2006-2010 he was a Postdoctoral Fellow at McGill University where he was funded by the Fonds de la Recherche en Santé du Québec (FRSQ). He then joined UTHealth in 2010 as Postdoctoral Fellow where he was funded by the American Heart Association (AHA). He was promoted as a Research Track Assistant Professor in 2012 and in 2015 he became a Tenure-Track Assistant Professor at UTHealth. Originally from Barcelona, he may be hard to find if FC Barcelona is playing a Tournament Final!

    Weizhen Bi, MD

    Senior Research Associate

    Weizhen is originally from Liaoning Province in China. She joined the Karmouty Lab in September 2017. Weizhen completed her MSc and MD at China Medical School in ShenYang. She joined The McGovern Medical School at UTHealth as a postdoctoral fellow in 1993 and has since gained extensive expertise in tumor cell biology, vascular development and atherosclerosis. Since 2001, she worked in Dr. Joseph Alcorn's lab at UTHealth where she gained experience in lung cell biology and the role of surfactants in lung immunology. On her free time Weizhen enjoys spending time with her family and preparing traditional Chinese dishes.

    Scott Collum

    Scott D Collum

    PhD Student

    Scott is from Huckaybay, TX where he graduated first in his class from Huckaybay ISD and where he learned to raise farm animals. He then moved to college station where he graduated summa cum laude with a B.S. in Biochemistry from Texas A&M University. He then moved Houston to pursue his PhD at UTHealth in RNA biology and pulmonary diseases. Scott is an avid runner and completed his first marathon in December 2016. If you are looking for the best donuts in town, he is the person to ask!

    Tinne Mertens

    Tinne C Mertens, PhD

    Postdoctoral Fellow

    After she finished her Master degree in biomedical sciences at Hasselt University in Belgium, Tinne moved to Amsterdam in the Netherlands and started her PhD training at the Leiden University Medical Center. During her Master and PhD training, she worked extensively with in vitro air-liquid interface airway epithelial cell cultures of both animal and human origin. Next, she moved to Houston and joined the lab in June 2016 where she had the opportunity to work with in vitro cultures of human transplant and explant tissues in addition to translational experimental models of chronic lung disease. Combining in vitro cultures and in vivo models allows her to investigate of role specific cell types in the development of chronic lung disease and identify possible therapeutic targets, something I am very passionate about.

    Tinne loves traveling and learning new things about countries, their cultures and the people. She enjoys indoors rock climbing together with her husband and friends.

    Cory Wilson

    Cory Wilson

    MD/PhD Student

    Cory is from Little Elm, TX. He completed his BSc in Biochemistry from the University of Houston. He then joined the MD/PhD program at the MDAnderson / UTHealth Graduate School of Biomedical Sciences, he joined the Karmouty Lab in September 2017 where his project aimed to identify developmental re-programming in chronic lung disease. Cory enjoys cooking and is a BBQ connoisseur.

    Ankit Hanmandlu

    Nancy Wareing

    MD/PhD Student

    Nancy is from Austin, TX. She received her BS in Biology from Texas Christian University. She joined the UTHealth/MDAnderson/UPR Medical Scientist Training Program in 2015. She intends to specialize in Rheumatology. Her research interest is the role of aberrant expression of developmental genes in skin fibrosis. Her hobbies outside the lab include running, drawing and rock climbing.

    Ankit Hanmandlu

    Wang Wei, MD

    Visiting Scientist

    Wang Wei is a cardio thoracic surgeon from the Renmin Hospital of Wuhan University, China. His research interests include uncovering new strategies to treat acute respiratory distress syndrome (ARDS), in addition to identifying new treatments for cor pulmonale in chronic lung diseases. Outside the lab Wang Wei enjoys to play basketball and was part of a tug-of-war winning team in China.

  • News

    Recent accomplishments from the Lab

    Department of Defense Logo

    New DoD CDMRP Funding!


    Disrupting Six/Eya signalling as new therapy for lung fibrosis

    Lung diseases are currently the third killer in the US, behind cancer and cardiovascular conditions, yet there is a lack of effective therapies for lung diseases. Amongst lung diseases, lung fibrosis is a common condition. A defining feature of lung fibrosis is shortness of breath that is a result of the lung being unable to oxygenate blood effectively. This happens as a result of scarring in the alveolar spaces, which obliterates these airspaces where oxygen is able to diffuse into the red blood cells and oxygenate the body. Although we now understand the environmental, workplace and genetic predispositions that may lead to lung fibrosis, many of the mechanisms that promote and maintain this aberrant repair process are not known. There are very limited treatment options for patients with lung fibrosis, which accounts for approximately 50% of all lung transplantations. This highlights the need to develop new treatments for lung fibrosis.

    Novel findings have identified a molecule known as Sineoculis homeobox homolog 1 or Six1 to be elevated in patients with lung fibrosis. Six1 is only normally observed in the embryo where it plays a role in the development of the lungs, therefore its presence in adult lungs with lung fibrosis is abnormal. Remarkably, Six1 was observed to be present in lung epithelial cells from patients with IPF.

    AHA logo

    New AHA Funding!


    Ex-Vivo Lung Perfusion in Acute Lung Injury


    Pulmonary diseases are the 3rd largest killer in the US and include acute respiratory distress syndrome (ARDS), a fatal disease characterized by widespread inflammation and loss of barrier function of the lungs resulting in accumulation of fluid that leads to loss of gas exchange and subsequent death. Despite ongoing research efforts there are no pharmacological agents to treat ARDS. Specifically the adenosine signaling pathway plays a critical role however systemic treatments have significant side effects. Subsequently, treatment for ARDS is only supportive with mechanical ventilation, fluid management and extracorporeal membrane oxygenation (ECMO) for severe ARDS. Yet, novel primary care strategies are lacking so mortality is high with 40-45% of ARDS patients dying.

    It is essential for us to develop novel therapies for the treatment of ARDS in order to reduce the mortality of this fatal disease.


    NIH logo

    New R01 Funding!

    1R01 HL138510-01

    3’UTR shortening in Pulmonary Vascular Disease

    8 percentile score on first submission!


    Project Narrative


    Pulmonary hypertension is a disorder of the pulmonary vasculature defined by increased mean pulmonary arterial pressure (mPAP) leading to right-sided heart failure and ultimately death with 3 to 5 years of diagnosis; it can appear on its own or in association with chronic lung diseases. This proposal examines the mechanisms by which a process known as Alternative Polyadenylation leads to 3’UTR shortening contributing to vascular remodeling in PH. Knowledge obtained from these studies could lead to novel therapeutic options for patients suffering from pulmonary hypertension.


  • Collaborations

    At the forefront of Pulmonary Disease Research through access to highly valuable patient material and solid collaborations with physician scientists.


    Clinical Collaborations

    Memorial Hermann and Houston Methodist Research Institute​

    We collaborate closely with physician scientists at Memorial Hermann Hospital and Houston Methodist Hospital systems, making advances in translational research. Through these collaborations, Dr. Karmouty Quintana directs the UTHealth Pulmonary Center of Excellence lung tissue biobank. This Biobank is one of the largest in the country and it houses lungs from patients with COPD, IPF, Pulmonary Hypertension in addition to other lung diseases.


    Scientific Collaborations

    Local and International Network of Collaborators

    We collaborate with many basic-science laboratories locally and internationally to advance our understanding of how lung diseases develop with the hope of developing new treatments for disease. Current collaborations include the use of nanoparticles for gene-therapy for lung injury, microbiome research in patients with chronic lung injury and applying bio-informatics for lung research. 

  • Opportunities

    Do you want to be part of our Research Team? Contact us!

    We're interested in hearing about talented scientists!

  • Funding

    Current and Past Funding


    1R01 HL138510-01 (PI: Karmouty-Quintana)

    3’UTR shortening in Pulmonary Vascular Disease

    The goal of this project is to examine the effects of alternative polyadenylation in the development of pulmonary hypertension.

    Innovative Project Award

    18IPA34170220 (PI: Karmouty-Quintana)

    Ex-Vivo Lung Perfusion in Acute Lung Injury

    The project focused on evaluating the capacity of EVLP approaches as a novel approach to treat ARDS.

    Biomedical Research Grant

    RG-414673 (PI: Karmouty-Quintana)

    Alternative Polyadenylation in the pathogenesis of COPD

    The goal of this project is to examine the contribution of alternative polyadenylation in the pathogenesis of COPD

    Call for Grants Notification in IPF

    G-45857 (PI: Karmouty-Quintana)

    BMPR2 in Acute and Chronic Lung Injury.

    The goal of this project is to examine the contribution of bone morphogenic protein receptor 2 (BMPR2) in acute and chronic lung injury

    UTHealth Pulmonary Center of Excellence

    Discovery Award (PI: Karmouty-Quintana)

    CfIm25 links alternative polyadenylation with pulmonary hypertension and right ventricle hypertrophy

    The goal of this project is to understand the contribution of CFIM25 and its role in alternative polyadenylation in the pathogenesis of pulmonary hypertension

    Scientist Development Grant

    14SDG18550039 (PI: Karmouty-Quintana)

    The role of hyaluronan in pulmonary hypertension secondary to lung fibrosis

    This project focuses on understanding the contribution of hyaluronan in the development of pulmonary hypertension secondary to chronic lung diseases.

    Entelligence MD Actelion Award

    2013 (Karmouty-Quintana)

    The role of hyaluronan in pulmonary hypertension associated with idiopathic pulmonary fibrosis (IPF)

    The project focused on understanding the contribution of hyaluronan in the development of pulmonary hypertension secondary to chronic lung diseases.